Time-dependent gene network modelling by sequential Monte Carlo. GeneNetParticleFilter - MatLab codes

Ancherbak S, Kuruoglu E E

Gene networks  Sequential Monte Carlo  Time varying networks  Graph Theory. Network problems 

This document describes the MatLab codes used to perform gene network modelling. Our aim is by tracking gene expression data undergone due to different external perturbations in a gene network in time domain to model conditional dependencies between random variables (gene expression values) across time epochs, and to learn online a time varying gene network. The methodology used is particle filtering or sequential Monte Carlo. structure.